Mechanistic Insights into UV Spectral Changes of Pyruvic Acid and Pyruvate Part 1: Interaction with Water Molecules
Main Article Content
Abstract
We investigate how the UV spectra of pyruvic acid (PA) and pyruvate are impacted by interactions with water molecules. In particular, we would like to understand the mechanistic origin of the blue shift in the n →− π∗ transition. Pyruvic acid is the simplest α-keto organic acid and is common in the environment. We use density functional theory to optimize geometries to determine excitation energies and ϐind that the excitation energies of the two main pyruvic acid conformers and pyruvate blue shift when interacting with 1 to 4 water molecules, both in vacuo and in a solvent. The excitation wavelength is blue-shifted by 0.9-9.2 nm when adding water molecules to the lowest energy conformer of PA. Calculations of the UV spectra of pyruvic acid (PA) and pyruvate are crucial for understanding the impact of the interactions with water molecules.
Article Details
Copyright (c) 2024 Petersen-Sonn EA, et al.

This work is licensed under a Creative Commons Attribution 4.0 International License.
The International Journal of Physics Research and Applications is committed in making it easier for people to share and build upon the work of others while maintaining consistency with the rules of copyright. In order to use the Open Access paradigm to the maximum extent in true terms as free of charge online access along with usage right, we grant usage rights through the use of specific Creative Commons license.
License: Copyright © 2017 - 2025 | Open Access by International Journal of Physics Research and Applications is licensed under a Creative Commons Attribution 4.0 International License. Based on a work at Heighten Science Publications Inc.
With this license, the authors are allowed that after publishing with the journal, they can share their research by posting a free draft copy of their article to any repository or website.
Compliance 'CC BY' license helps in:
Permission to read and download | ✓ |
Permission to display in a repository | ✓ |
Permission to translate | ✓ |
Commercial uses of manuscript | ✓ |
'CC' stands for Creative Commons license. 'BY' symbolizes that users have provided attribution to the creator that the published manuscripts can be used or shared. This license allows for redistribution, commercial and non-commercial, as long as it is passed along unchanged and in whole, with credit to the author.
Please take in notification that Creative Commons user licenses are non-revocable. We recommend authors to check if their funding body requires a specific license.
George C, Ammann M, D’Anna B, Donaldson D, Nizkorodov SA. Heterogeneous photochemistry in the atmosphere. Chem Rev. 2015;115(10):4218-58. Available from: https://doi.org/10.1021/cr500648z
Ciuraru R, Fine L, Van Pinxteren M, D’Anna B, Herrmann H, George C. Photosensitized production of functionalized and unsaturated organic compounds at the air-sea interface. Sci Rep. 2015;5:1-10. Available from: https://doi.org/10.1038/srep12741
Gordon BP, Moore FG, Scatena LF, Richmond GL. On the rise: Experimental and computational vibrational sum frequency spectroscopy studies of pyruvic acid and its surface-active oligomer species at the air-water interface. J Phys Chem A. 2019;123(49):10609-19. Available from: https://doi.org/10.1021/acs.jpca.9b08854
Anglada JM, Martins-Costa MT, Francisco JS, Ruiz-López MF. Photoinduced oxidation reactions at the air-water interface. J Am Chem Soc. 2020; 142(38):16140-55. Available from: https://doi.org/10.1021/jacs.0c06858
Horowitz A, Meller R, Moortgat GK. The uv–vis absorption cross sections of the α-dicarbonyl compounds: pyruvic acid, biacetyl, and glyoxal. J Photochem Photobiol A Chem. 2001;146(52):19-27. Available from: https://doi.org/10.1016/S1010-6030(01)00601-3
Mellouki A, Mu Y. On the atmospheric degradation of pyruvic acid in the gas phase. J Photochem Photobiol A Chem. 2003;157(2-3):295-300. Available from: https://doi.org/10.1016/S1010-6030(03)00070-4
Keller-Rudek H, Moortgat G, Sander R, Sörensen R. The mpi-mainz UV/vis spectral atlas of gaseous molecules of atmospheric interest. Earth Syst Sci Data. 2013;5(2):365-73. Available from: https://doi.org/10.5194/essd-5-365-2013
Burkholder J, Sander S, Abbatt J, Barker J, Cappa C, Crounse J, et al. Chemical kinetics and photochemical data for use in atmospheric studies; evaluation number 19. Tech. rep., Pasadena, CA: Jet Propulsion Laboratory, National Aeronautics and Space Administration. Available from: https://www. researchgate.net/proϐile/Robert-Huie/publication/343224193_NASA-JPL_ Evaluation_19-5/links/5f1de1e192851cd5fa4b0cef/NASA-JPLEvaluation-19-5.pdf
Blair SL, Reed Harris AE, Frandsen BN, Kjaergaard HG, Panguí E, Cazaunau M, et al. Conformer-speciϐic photolysis of pyruvic acid and the effect of water. J Phys Chem A. 2020;124(7):1240-52. Available from: https://doi.org/10.1021/acs.jpca.9b10613
Chai JD, Head-Gordon M. Long-range corrected hybrid density functionals with damped atom-atom dispersion corrections. Phys Chem Chem Phys. 2008;10:6615-20. Available from: https://doi.org/10.1039/b810189b
Yanai T, Tew D, Handy N. A new hybrid exchange-correlation functional using the coulomb-attenuating method (cam-b3lyp). Chem Phys Lett. 2004;393:51- 7. Available from: https://doi.org/10.1016/j.cplett.2004.06.011
Dunning Jr TH. Gaussian basis sets for use in correlated molecular calculations. i. the atoms boron through neon and hydrogen. J Chem Phys. 1989;90:1007-23. Available from: https://doi.org/10.1063/1.456153
Frisch MJ, Trucks GW, Schlegel HB, Scuseria GE, Robb MA, Cheeseman JR, et al. Gaussian 16 Revision C.01. Wallingford CT: Gaussian Inc.; 2016.
Rosati B, Christiansen S, Wollesen de Jonge R, Roldin P, Jensen MM, Wang K, et al. New particle formation and growth from dimethyl sulϐide oxidation by hydroxyl radicals. ACS Earth Space Chem. 2021;5(4):801-811. PMID: 33889792. Available from: https://doi.org/10.1021/acsearthspacechem.0c00333
Kubečka J, Christensen AS, Rasmussen FR, Elm J. Quantum machine learning approach for studying atmospheric cluster formation. Environ Sci Technol Lett. 2022;9(3):239-44. Available from: https://doi.org/10.1021/acs.estlett.1c00997
Elm J, Bilde M, Mikkelsen KV. Assessment of density functional theory in predicting structures and free energies of reaction of atmospheric prenucleation clusters. J Chem Theory Comput. 2012 Jun 12;8(6):2071-7. Available from: https://doi.org/10.1021/ct300192p.
Shemesh D, Luo M, Grassian V, Gerber RB. Absorption spectra of pyruvic acid in water: Insights from calculations for small hydrates and comparison to experiment. Phys Chem Chem Phys. 2020;22. Available from: https://pubs.rsc.org/en/content/articlelanding/2020/cp/d0cp01810d
Kakkar R, Chadha P, Verma D. A theoretical study of structures and unimolecular decomposition pathways of pyruvic acid. Internet Electron J Mol Des. 2006;5(1):27-48. Available from: https://www.researchgate. net/publication/228504770_A_Theoretical_Study_of_Structures_and_ Unimolecular_Decomposition_Pathways_of_Pyruvic_Acid
Bartlett RJ, Musiał M. Coupled-cluster theory in quantum chemistry. Rev Mod Phys. 2007;79(1):291. Available from: https://doi.org/10.1103/RevModPhys.79.291
Suellen C, Freitas RG, Loos PF, Jacquemin D. Cross-comparisons between experiment, td-dft, cc, and adc for transition energies. J Chem Theory Comput. 2019;15(8):4581-90. Available from: https://doi.org/10.1021/acs.jctc.9b00446
Chang XP, Fang Q, Cui G. Mechanistic photodecarboxylation of pyruvic acid: Excited-state proton transfer and three-state intersection. J Chem Phys. 2014;141(15):154311. Available from: https://doi.org/10.1063/1.4898085
Yamamoto S, Back R. The photolysis and thermal decomposition of pyruvic acid in the gas phase. Can J Chem. 1985;63(2):549-54. Available from: https://www.semanticscholar.org/paper/The-photolysis-and-thermaldecomposition-of-pyruvic-Yamamoto-Back/5305af9df854c6ff82958d02617 d182b86ba181a
Jensen F. Introduction to Computational Chemistry. Germany: Wiley; 2017.
Hillers-Bendtsen AE, Todarwal Y, Pittelkow M, Norman P, Mikkelsen KV. Modeling absorption and emission spectroscopies of symmetric and asymmetric azaoxahelicenes in vacuum and solution. J Phys Chem A. 2022;126(37):6467-72. Available from: https://doi.org/10.1021/acs.jpca.2c05721
Hillers-Bendtsen AE, Todarwal Y, Norman P, Mikkelsen KV. Dynamical effects of solvation on norbornadiene/quadricyclane systems. J Phys Chem A. 2024;128(13):2602-10. PMID: 38511966. Available from: https://doi.org/10.1021/acs.jpca.4c00045